CSTB team: Complex Systems and Translational Bioinformatics

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Team activities in 2023 | Previous years

Scientific highlights

May

12/05 : Parition d'une communication grand public : 'Enseignement supérieur et désinformation: quel bilan dans les écoles d’ingénieur ?', dans 'Lutte contre les manipulations de l’information: Regards croisés de spécialistes et d’acteurs du domaine' Livre Blanc du Pôle d’Excellence Cyber, avec la participation de P. Parrend.

April

6/04 : Article accepted in Frontiers in Bioinformatics : Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events, A. Kress et al. 2023
15/4 : Start of PhD thesis by Côme Frappé-Vialatoux, ANR project Correau (detection of attacks on water networks)
19/04 : Invited talk by P. Parrend : Trusted Graph for explainable detection of cyberattacks, au Cyber CNI Lecture Series (TALK.cybercni.fr) which aims to raise awareness of cybersecurity issues among all audiences and to enable a permanent dialogue between industry and academic experts and the general public.
26/04 : "Best Paper Award" at the conference Complex Computational Ecosystems 2023, Baku : "Metrics for Evaluating Interface Explainability Models for Cyberattack Detection in IoT Data”, Amani Abou Rida

March

6/03 : Submission of a co-supervised thesis between Laurence Choulier (Laboratoire de Bioimagerie et Pathologies, UMR7021) and Odile Lecompte
6/03 : Submission of a co-supervised thesis betweene Jean Louis Mandel (IGBMC) and Julie Thompson
13/03 : Presentation at the first working group meeting "Aspects Computationnels de l'Éthique" (GDR RADIA) at LIP6, Paris : "Éléments d'épistémologie et d'éthique des systèmes d’apprentissage automatique", Anne Jeannin-Girardon
14/03 : Submission of a project SMART4CBT (Sciences sociales, Microenvironnement & analyses multiomiques dans la résistance au RadioThérapie dans les tumeurs cérébrales de l'enfant) pour la création d'un Centre de Recherche Intégrée Nord-Est en Oncopédiatrie (National AAP INCA), Olivier Poch
15/03 : Meeting with members of SATT CONECTUS concerning valorisation of tools developed by CSTB and BiGEst-ICube, Olivier Poch, Arnaud Kress/Luc Mouliner
26/03 : Submission of the plan for the new Bioinformatics and Structural Bioimaging course of the Strasbourg Master in Life Sciences (co-head : O. Lecompte)
27-31/03 : Presentation of J.-S. Sereni at the online symposium « χ-boundedness », in the context of the network A Sparse (Graphs) Coalition
29/03 : Article published in Journal of Fungi : C. Mayer et al. CeGAL: Redefining a Widespread Fungal-Specific Transcription Factor Family Using an In Silico Error-Tracking Approach

February

02/02 : Work meeting with Emmanuelle Leize (Laboratoire de Spectrométrie de Masse des Interactions et des Systèmes) to discuss a collaboration on the use of AI approaches in proteomics. J. Thompson, K. Chennen.
02-03/02 : Participation of Dorine Merlat at the conference Omics Days 2023 (Montpellier)
8/02 : Participation in mentoring circle (O. Lecompte)

January

09/01 : Invited talk by D. Merlat - ERGA Annotation Committee
11/01: intervention at conference Artificial Intelligence at ESBS : "Intelligence artificielle, éthique et santé" (A. Jeannin-Girardon) 12/01: Participation at Journées des Universités (O. Lecompte)
23-25/01 : Presentation of a poster at ALPHY meeting (Grenoble) by Dorine Merlat

Visitors

04-08/04 : Visit by J. Volec (Czech Technical University, Czech Republic).

Doctoral students

Internships

15/03 : Start of M1 internship by Burak Arti, M1 BSIB, supervised by Julie Thompson and Laetitia Poidevin
15/03 : Start of M1 internship by Julien Schaffer, M1 BSIB, supervised by Julie Thompson and Kirsley Chennen
15/03 : Start of M1 internship by Dehelia Chettouf, M1 BSIB, supervised by Claudine Mayer, Kirsley Chennen and Olivier Poch
15/03 : Start of M1 internship by Migena Bejko, M1 BSIB, supervised by Kirsley Chennen, Claudine Mayer and Olivier Poch
15/03 : Start of M1 internship by Deborah Antonio, M1 BSIB, supervised by Claudine Mayer and Olivier Poch

27/02 : Start of M1 internship by Fazil Mammadov, UFAZ, Baku, supervised by Rabih Amhaz

15/01 : Start of M2 internship by Lucille Herbay (Science de la vie, biologie moléculaire) supervised by Julie Thompson, Arnaud Kress

Administrative activities

9/02 : Meeting of workgroup RDA Unistra (J. Thompson, Paulette Lieby)
10/02 : Steering committee Science Ouverte de l'Unistra (J. Thompson)

20/01 : Meeting to organise the new master Unistra in bioinformatics and structural bioimaging, for 2024 (O. Lecompte, J. Thompson)
23/01 : RDA organisational assembly (J. Thompson)

Miscellaneous

7/02 : First session of a training course on Sexual and Gender-Based Violence and Homophobia
21/03 : Second session of a training course on Sexual and Gender-Based Violence and Homophobia


Team life

Team meetings

(*) Every Tuesday 13h30 to 15h30
1st Tuesday of the month : Reports of members A-G
2nd Tuesday of the month : Reports of members H-N
3rd Tuesday of the month : Reports of members O-Z
4th Tuesday of the month : Meeting for permanent members

Each Thursday at 14h00 : Presentations of trainees/students followed by questions (2 to 3 presentations of 12 min for trainees and 1st and 2nd year PhD students, 20 min for 3rd year PhD students).

23/02 : (*) Meeting to discuss the organisation of the presentations

13/04 : (*) Session "Jeun's" Presentation by Arnaud Kress
06/04 : (*) Session "Jeun's" Presentation by Ihsane Errami
30/03 : (*) Session "Jeun's" Presentation by Corentin Meyer
23/03 : (*) Session "Jeun's" Presentation by Deborah Antonio, Burak Arti, Migena Bejko, Dehelia Chettouf and Julien Schaffer
16/03 : (*) Session "Jeun's" Presentation by Anne Jeannin-Girardon et Hiba Khodji