|
|
| Line 9: |
Line 9: |
| | 05/01 : Article "Pathogenic missense variation in PABPC1L/EPAB causes female infertility due to oocyte maturation arrest at the germinal vesicle stage" Journal of Assisted Reproduction and Genetics (accepted in december) publishe on line (C. Mayer, K. Chennen)</br> | | 05/01 : Article "Pathogenic missense variation in PABPC1L/EPAB causes female infertility due to oocyte maturation arrest at the germinal vesicle stage" Journal of Assisted Reproduction and Genetics (accepted in december) publishe on line (C. Mayer, K. Chennen)</br> |
| | | | |
| − | == December ==
| |
| − | 21/12 : Submission of a project to the call "Approches interdisciplinaires des processus oncogéniques et perspectives thérapeutiques", ITMO Cancer (O. Lecompte, collaboration ICUBE/ LBP/ CRCM)</br>
| |
| − | 18/12 : Participation in the PhD jury of V Andriamanga - Université de Paris-Saclay (O. Lecompte)</br>
| |
| − | 19-20/12 : Participation in the annual general meeting of the Institut Francais de Bioinformatique (Julie Thompson)</br>
| |
| − | 14/12 : Participation in the PhD jury of Goran Bich - IGBMC (J. Thompson)</br>
| |
| − | 04/12 : Work meeting with Raphael Carapito and Raony Guimaraes (Centre de Recherche d'Immunologie et d'Hématologie) concerning a potential collaboration for multi-omic analyses and AI</br>
| |
| − | 01/12 : PhD thesis defense of Naser Ghannad, "Metaheuristics and machine learning algorithms for the inventive design problem-solving loop", supervised by Roland de Guio and Pierre Parrend</br>
| |
| − |
| |
| − | == November ==
| |
| − | 21/11 : Article "The MetaInvert soil invertebrate genome resource provides insights into below-ground biodiversity and evolution" (Collins et al.) accepted in Communications Biology<br>
| |
| − | 20/11 : Invited conference : Ethique et IA, Université Andrés Bello, Viña del Mar, Chili, Pierre Collet<br>
| |
| − | 17/11 : Invited conference : Systèmes Complexes, Université Alberto Hurtado, Santiatgo du Chili, Pierre Collet<br>
| |
| − | 17/11 : Invited conference : Ethique et IA, Université Alberto Hurtado, Santiatgo du Chili, Pierre Collet<br>
| |
| − | 7/11 : PhD thesis defense of Hiba Khodji, "Apprentissage profond et transfert de connaissances pour la détection d’erreurs dans les séquences biologiques" supervised by Julie Thompson, Anne Jeannin-Girardon and Pierre Collet<br>
| |
| − |
| |
| − | == October ==
| |
| − | 30/10 : Move to new offices at Clovis Vincent<br>
| |
| − | 23/10 : Article "Temporal dynamics of the immune response in Astacus astacus challenged with Aphanomyces astaci" accepted in Fish and Shellfish Immunology (Boštjančić et al.)<br>
| |
| − | 20/10 : Thesis defense by Corentin Meyer, CNRS 80|PRIME "MYO-xIA : IA explicable pour la classification intégrée et la prédiction des myopathies congénitales" supervisors Olivier Poch, Pierre Collet<br>
| |
| − | 15/10 : Project X-KDEVS - eXplainable Knowledge-Enhanced DEVS Simulation for Complex Systems, JCJC ANR2024 submitted (Ali Ayadi)<br>
| |
| − | 10/10 : Ali Ayadi ajoined the scientific committee of RED (Réseau DEVS - Discrete Event System Specification).<br>
| |
| − | 09/10 : Submission of a junior professor chair (O. Lecompte)<br>
| |
| − | 02/10 : Start of Phd thesis by Quentin Rott (co-direction O. Lecompte, L. Choulier)<br>
| |
| − |
| |
| − | == September ==
| |
| − | 28/09 : Project "EN HOPE SMART4CBT : "East North-Hematology Oncology PEdiatric consortium : research program of Social sciences, Microenvironment & multiomics Analyses in RadioTherapy resistance For Children Brain Tumors" '''LABELLISE''' centre de recherche intégrée d’excellence en cancérologie pédiatrique (PEDIACRIEX23) par l'Institut National de Cancer - (K. Chennen, A. Kress, L. Poidevin, porteur ICube: O. Poch)</br>
| |
| − | 21/09 : '''Steering committee''' of Project RaReTIA : Artificial Intelligence for Rare Eye Genetic Diseases" - (K. Chennen, A. Kress, porteur ICube: O. Poch)</br>
| |
| − | 20/09 : Project CZI (Chan Zuckerberg Initiative) Collaborative Pairs Pilot Project Awards: "Moonlighting functions in neurodegenerative aaRSopathies", passed the first round (11/08) and submission of final project (K. Chennen, A. Kress, C. Mayer, O. Poch, porteur : A. Ayadi)</br>
| |
| − | 5-8/09 : Participation at conference CrayfIT (Pavia, Italie) by Lena Bonassin, Christelle Rutz and Luka Bostjancic - Best presentation prize Luka Bostjancic</br>
| |
| − | 4-8/09 : Visite d'Ulviyya Abdulkarimova, maîtresse de conférence, membre associée de l'équipe CSTB, UFAZ French-Azerbaijani University </br>
| |
| − | 04/09 : Consortium agreeement signed fo the project "RaReTIA: Artificial Intelligence for Rare Eye Genetic Diseases" (K. Chennen, A. Kress, porteur ICube: O. Poch)</br>
| |
| − | 01/09 : Article "Modeling and simulation of the sars-cov-2 lung infection and immune response with cell-devs" accepted in Winter Simulation Conference 2023 (A. Ayadi et al.)</br>
| |
| − | 01/09 : Project Extreme Phenotpyes in Retinopathies, AAp Retina France submitted (K. Chennen, porteur ICube : O. Poch)</br>
| |
| − | 01/09 : Project EpiTarget in Glioma, AAP ERA-NET TransCan3 (Translational Cancer research) submitted (K. Chennen)</br>
| |
| − | 01/09 : Project Retina Rare Disease PartnerShip, AAP European Rare Diseases Research Alliance accepted (K. Chennen, Porteur ICube: O. Poch)</br>
| |
| − |
| |
| − | == August ==
| |
| − | 31/08 : Launch of « [https://igt.centre-mersenne.org/ Innovations in Graph Theory] », mathematical journal on graph theory and interactions with other domains.
| |
| − | Journal follows the « Diamond open access » model : free for authors, free for readers.<br />
| |
| − | 14/08 : Obtention of thesis funding from IBM, on quantic algorithms by Léo Cheneau, supervisor P. Collet<br />
| |
| − | 12/08 : Article "Abundance and diversification of repetitive elements in Decapoda genomes" (C. Rutz ''et al.'') accepted in Genes <br />
| |
| − | 11/08 : Project accepted in round 2 of Chan Zuckerberg Initiative (CZI) Collaborative Pairs Pilot Project Awards : 'Moonlight functions in neurodegenerative aaRsopathies', porteur Ali Ayadi <br />
| |
| − |
| |
| − | == July ==
| |
| − | 31/07 : Participation in thesis committee of Hosna Baniadam (EMBL) - O. Lecompte<br />
| |
| − | 12/07: Start of WP4 for the project ANR Correau (Détection d'attaque dans les réseaux d'eau) : leader ICube - P. Parrend<br />
| |
| − | 11/07 : Participation in thesis jury of Hrishikesh Dhondge, INRIA Nancy - J. Thompson <br />
| |
| − | 07/07 : Obtention of PhD funding (DS Life and Health) by Quentin Rott (co-supervisors L. Choulier and O. Lecompte)<br />
| |
| − | 03/07 : Participation by O. Lecompte in HDR jury of Catherine Mathé (Université Toulouse III)<br />
| |
| − |
| |
| − |
| |
| − | == May ==
| |
| − | 10-12/05 : Participation at RESSI (Rendez-Vous de la Recherche et de l'Enseignement de la Sécurité des Systèmes d'Information), M. Jaber, J. Michel, P. Parrend. <br>
| |
| − | 11/05 : Discrete mathematics seminaire : Spanning trees in regular graphs, KIT - Karlsruher Institut für Technologie, J.-S. Sereni. <br>
| |
| − | 12/05 : Publication of a document for the general public : 'Enseignement supérieur et désinformation: quel bilan dans les écoles d’ingénieur ?', in 'Lutte contre les manipulations de l’information: Regards croisés de spécialistes et d’acteurs du domaine' White paper from the Pôle d’Excellence Cyber, contribution from P. Parrend. <br>
| |
| − |
| |
| − | == April ==
| |
| − | 6/04 : Article accepted in Frontiers in Bioinformatics : Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events, A. Kress et al. 2023<br />
| |
| − | 15/4 : Start of PhD thesis by Côme Frappé-Vialatoux, ANR project Correau (detection of attacks on water networks)<br />
| |
| − | 19/04 : Invited talk by P. Parrend : Trusted Graph for explainable detection of cyberattacks, au Cyber CNI Lecture Series (TALK.cybercni.fr) which aims to raise awareness of cybersecurity issues among all audiences and to enable a permanent dialogue between industry and academic experts and the general public.<br />
| |
| − | 26/04 : "Best Paper Award" at the conference Complex Computational Ecosystems 2023, Baku : "Metrics for Evaluating Interface Explainability Models for Cyberattack Detection in IoT Data”, Amani Abou Rida <br />
| |
| − | <br />
| |
| − |
| |
| − | == March ==
| |
| − | 6/03 : Submission of a co-supervised thesis between Laurence Choulier (Laboratoire de Bioimagerie et Pathologies, UMR7021) and Odile Lecompte<br />
| |
| − | 6/03 : Submission of a co-supervised thesis betweene Jean Louis Mandel (IGBMC) and Julie Thompson<br />
| |
| − | 13/03 : Presentation at the first working group meeting "Aspects Computationnels de l'Éthique" (GDR RADIA) at LIP6, Paris : "Éléments d'épistémologie et d'éthique des systèmes d’apprentissage automatique", Anne Jeannin-Girardon<br />
| |
| − | 14/03 : Submission of a project SMART4CBT (Sciences sociales, Microenvironnement & analyses multiomiques dans la résistance au RadioThérapie dans les tumeurs cérébrales de l'enfant) pour la création d'un Centre de Recherche Intégrée Nord-Est en Oncopédiatrie (National AAP INCA), Olivier Poch<br />
| |
| − | 15/03 : Meeting with members of SATT CONECTUS concerning valorisation of tools developed by CSTB and BiGEst-ICube, Olivier Poch, Arnaud Kress/Luc Mouliner<br />
| |
| − | 26/03 : Submission of the plan for the new Bioinformatics and Structural Bioimaging course of the Strasbourg Master in Life Sciences (co-head : O. Lecompte)<br />
| |
| − | 27-31/03 : Presentation of J.-S. Sereni at the online symposium « χ-boundedness », in the context of the network ''A Sparse (Graphs) Coalition''<br />
| |
| − | 29/03 : Article published in Journal of Fungi : C. Mayer et al. CeGAL: Redefining a Widespread Fungal-Specific Transcription Factor Family Using an In Silico Error-Tracking Approach<br />
| |
| − |
| |
| − | == February ==
| |
| − | 02/02 : Work meeting with Emmanuelle Leize (Laboratoire de Spectrométrie de Masse des Interactions et des Systèmes) to discuss a collaboration on the use of AI approaches in proteomics. J. Thompson, K. Chennen.<br />
| |
| − | 02-03/02 : Participation of Dorine Merlat at the conference Omics Days 2023 (Montpellier)<br />
| |
| − | 8/02 : Participation in mentoring circle (O. Lecompte)
| |
| − |
| |
| − | == January ==
| |
| − | 09/01 : Invited talk by D. Merlat - ERGA Annotation Committee<br />
| |
| − | 11/01: intervention at [https://esbs.unistra.fr/acces-directs/actualites/actualite/default-ae15da7018 conference Artificial Intelligence at ESBS] : "Intelligence artificielle, éthique et santé" (A. Jeannin-Girardon)
| |
| − | 12/01: Participation at Journées des Universités (O. Lecompte)<br />
| |
| − | 23-25/01 : Presentation of a poster at ALPHY meeting (Grenoble) by Dorine Merlat
| |
| − | <br />
| |
| | | | |
| | = Visitors = | | = Visitors = |
| − | 04-08/04 : Visit by J. Volec (Czech Technical University, Czech Republic). <br />
| |
| | <br /> | | <br /> |
| | | | |
| | = Doctoral students = | | = Doctoral students = |
| − | 03/05 : Individual thesis follow-up committee (CSI) for Alix Simon, supervisors J. Thompson and J. Laporte (IGBMC)<br />
| |
| − | 16/05 : Individual thesis follow-up committee (CSI) for Luka Boštjančić, supervisors O. Lecompte et K. Theissinger (LOEWE Centre for Translational Biodiversity Genomics, Frankfurt)<br />
| |
| − | 30/05 : Individual thesis follow-up committee (CSI) for Christelle Rutz, supervisor O. Lecompte <br />
| |
| − | 31/05 : Individual thesis follow-up committee (CSI) for Nicolas Haas, supervisor O. Poch <br />
| |
| | | | |
| | = Internships = | | = Internships = |
| − | 15/03 : Start of M1 internship by Burak Arti, M1 BSIB, supervised by Julie Thompson and Laetitia Poidevin <br />
| + | 07/01 : Start of internship of Zephyrin Enaux, M2 BSIB. Supervisors: Julie Thompson et Anne Jeannin-Girardon<br /> |
| − | 15/03 : Start of M1 internship by Julien Schaffer, M1 BSIB, supervised by Julie Thompson and Kirsley Chennen <br />
| + | 07/01 : Start of internship of Laura Billard, M1 Biologie Santé. Supervisor: Kirsley Chennen <br /> |
| − | 15/03 : Start of M1 internship by Dehelia Chettouf, M1 BSIB, supervised by Claudine Mayer, Kirsley Chennen and Olivier Poch <br />
| |
| − | 15/03 : Start of M1 internship by Migena Bejko, M1 BSIB, supervised by Kirsley Chennen, Claudine Mayer and Olivier Poch <br />
| |
| − | 15/03 : Start of M1 internship by Deborah Antonio, M1 BSIB, supervised by Claudine Mayer and Olivier Poch <br />
| |
| − | <br />
| |
| − | 27/02 : Start of M1 internship by Fazil Mammadov, UFAZ, Baku, supervised by Rabih Amhaz <br />
| |
| | <br /> | | <br /> |
| | | | |
| − | 15/01 : Start of M2 internship by Lucille Herbay (Science de la vie, biologie moléculaire) supervised by Julie Thompson, Arnaud Kress<br />
| |
| − | <br />
| |
| | | | |
| | = Administrative activities = | | = Administrative activities = |
| − |
| |
| − | 9/02 : Meeting of workgroup RDA Unistra (J. Thompson, Paulette Lieby)<br />
| |
| − | 10/02 : Steering committee Science Ouverte de l'Unistra (J. Thompson)<br />
| |
| − | <br />
| |
| − | 20/01 : Meeting to organise the new master Unistra in bioinformatics and structural bioimaging, for 2024 (O. Lecompte, J. Thompson)<br />
| |
| − | 23/01 : RDA organisational assembly (J. Thompson)<br />
| |
| | <br /> | | <br /> |
| | | | |
| | = Miscellaneous = | | = Miscellaneous = |
| − | 7/02 : First session of a training course on Sexual and Gender-Based Violence and Homophobia <br />
| + | |
| − | 21/03 : Second session of a training course on Sexual and Gender-Based Violence and Homophobia <br />
| |
| | <br /> | | <br /> |
| | | | |
| Line 136: |
Line 33: |
| | | | |
| | '''(*) Every Tuesday 13h30 to 15h30'''<br /> | | '''(*) Every Tuesday 13h30 to 15h30'''<br /> |
| − | 1st Tuesday of the month : Reports of members A-G<br /> | + | 1st Tuesday of the month : Reports of members A-M<br /> |
| − | 2nd Tuesday of the month : Reports of members H-N<br /> | + | 2nd Tuesday of the month : Journal Club<br /> |
| − | 3rd Tuesday of the month : Reports of members O-Z<br /> | + | 3rd Tuesday of the month : Reports of members M-Z<br /> |
| | 4th Tuesday of the month : Meeting for permanent members<br /> | | 4th Tuesday of the month : Meeting for permanent members<br /> |
| | | | |
| − | Each Thursday at 14h00 : Presentations of trainees/students followed by questions (2 to 3 presentations of 12 min for trainees and 1st and 2nd year PhD students, 20 min for 3rd year PhD students).<br />
| + | Every second Tuesday at 15h00 : Presentations of trainees/students followed by questions (2 to 3 presentations of 12 min for trainees and 1st and 2nd year PhD students, 20 min for 3rd year PhD students).<br /> |
| − | | |
| − | 23/02 : (*) Meeting to discuss the organisation of the presentations<br />
| |
| − | | |
| − | 13/04 : (*) Session "Jeun's" Presentation by Arnaud Kress<br />
| |
| − | 06/04 : (*) Session "Jeun's" Presentation by Ihsane Errami<br />
| |
| − | 30/03 : (*) Session "Jeun's" Presentation by Corentin Meyer<br />
| |
| − | 23/03 : (*) Session "Jeun's" Presentation by Deborah Antonio, Burak Arti, Migena Bejko, Dehelia Chettouf and Julien Schaffer<br />
| |
| − | 16/03 : (*) Session "Jeun's" Presentation by Anne Jeannin-Girardon et Hiba Khodji<br />
| |
| | | | |
| | | | |
| | [[fr:Faits_marquants]] | | [[fr:Faits_marquants]] |
