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| − | '''Team activities in 2022''' | ''[[Activites archives|Previous years]]'' | + | '''Team activities in 2024''' | ''[[Activites archives|Previous years]]'' |
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| | = Scientific highlights = | | = Scientific highlights = |
| | + | == March == |
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| − | 01/07 : Participation of J.-S. Sereni in the PhD jury of Hoang La, LIRMM, Université de Montpellier<br />
| + | 25/03: Article "Meyer et al. IMPatienT: an Integrated web application to digitize, process and explore Multimodal PATIENt daTa" accepted for publication in Journal of Neuromuscular Diseases.</br> |
| − | 06/07 : Presentation at <em>International Conference on Graph Theory</em>: <em>Spanning trees in regular graphs</em> (J.-S. Sereni)<br />
| + | 21/03: Seminars by PhD students concerning the topic 'détection pour la cybersécurité' with Sherbrooke University (follow up of their visit in February)</br> |
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| + | 21/03: Presentations accepted in RESSI (Rendez-Vous de la Recherche et de l'Enseignement de la Sécurité des Systèmes d'Information; mai) for PhD students of Pierre Parrend: Julien Michel, Majed Jaber, Côme Frappé-Vialatoux</br> |
| − | | + | 11/03: The project for a Junior Professor Chair 'Atlas comparatif des répertoires de gènes et relations génotype-phénotype' led by Odile Lecompte is accepted. </br> |
| − | 03/06 : Meeting with Google Cloud to present the OrthoInspector project, and use of IA for intégration of 3D structures in the analysis of genetic variants (Olivier Poch, Kirsley Chennen, Arnaud Kress, Julie Thompson) <br /> | |
| − | 10/06 : Participation of J.-S. Sereni in the PhD jury of Yitting Jiang, IRIF, Université de Paris<br />
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| − | 15/06 : Presentation at the doctoral school day of the UHA in Mulhouse : "Intelligence Artificielle : de la technique aux enjeux sociaux" (Anne Jeannin-Girardon)<br />
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| − | 16-17/06 : Kickoff meeting of the project Atelier de la Donnée, Unistra ADELE Helpdesk (J. Thompson)<br />
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| − | 17/05 : Seminar by Kirsley Chennen : Printemps de la donnée, les données dans la thèse, organisé par l'Université de Strasbourg et l'Université de Haute-Alsace <br />
| + | == February == |
| − | 20/05 : Team seminar 'une éthique pour le 21è siècle', Pierre Collet <br /> | + | 23/02 : Article accepted : C. Frappé--Vialatoux et P. Parrend, Combining Physical and Network Data for Attack Detection in Water Distribution Networks, Water Distribution Systems Analysis (WDSA)/Computing and Control Water Industry (CCWI) Joint Conference, Ferrara, Italy.</br> |
| − | <br /> | + | 20/02 : Project meeting of CILRET-PASS (PIA and ITMO Génétique Génomique et Bioinformatique d'AVIESAN): Work in progress and perspectives.</br> |
| | + | 12/02 : Invited seminar by Prof Lennart Martens, Ghent University. Lennart is head of the CompOmics [https://www.compomics.com] team and a specialist in the development of tools for proteomics data analysis, including AI approaches.</br> |
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| − | 04-08/04 : Online colloque "Directed Minors & Digraphs Structure Theory", organised by J.-S. Sereni, R. Steiner & S. Wiederrecht in the context of the network « A Sparse (Graphs) Coalition<br />
| + | == January == |
| − | 05/04 : Meeting with SDC team (N. Lachiche, G. Frey) : graph-based analysis of biological networks<br />
| + | 24/01 : PhD thesis defense of Amani Abou-Rida, "Enhancing Detection and Explainability in Cybersecurity: A Shift from Machine Learning to Graph Learning.", supervised by Rabih Amhaz and Pierre Parrend</br> |
| − | 20/04 : RMeeting Institut Francais de Bioinformatique, GT Bioinfo Santé (K. Chennen, J. Thompson)<br />
| + | 09/01 : Article “Impact of Decentralized Autonomous Organizations (DAO) on society 5.0” accepted in 8th International Conference on Networks and Communications, Rabih Amhaz</br> |
| − | 22/04 : Poster presentations at Doctoral School days for Sciences de la Vie et de la Santé (C. Rutz, C. Meyer)<br />
| + | 29/01 : Project CZI (Chan Zuckerberg Initiative) Collaborative Pairs Pilot Project Awards: "Moonlighting functions in neurodegenerative aaRSopathies", proposition rejected</br> |
| − | 25/04 : First meeting of GT RDA (Research Data Alliance) Strasbourg (J. Thompson)<br />
| + | 05/01 : Article "Pathogenic missense variation in PABPC1L/EPAB causes female infertility due to oocyte maturation arrest at the germinal vesicle stage" Journal of Assisted Reproduction and Genetics (accepted in december) publishe on line (C. Mayer, K. Chennen)</br> |
| − | 29/04 : First meeting of GT Données EST, RDG (Recherche Data Gouv) : 'Atelier de la donnée' projects (J. Thompson) <br />
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| − | 02/03 : Project RainRARE, transcriptomic data reception and analysis ((Wojciech Krezel, Kirsley Chennen)<br />
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| − | 14/03 : Participation of O. Lecompte in the HDR jury of Anaïs Bardet, Université de Strasbourg<br />
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| − | 16/03 : Meeting NMD (Non-Sens mediated mRNA decay) - Thérapies de Translecture (Olivier Poch, Kirsley Chennen, Nicolas Hass, Jean-Paul Renaud, Fabrice Lejeune)<br />
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| − | 23-24/03 : Kick-off meeting of ANR PRCI GEODE at LOEWE Centre for Translational Biodiversity Genomics (Francfort) (O. Lecompte, C Rutz, D Merlat)<br />
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| − | 23/03 : Participation of J. Thompson in the HDR jury of Pierre Poulain, Université de Paris Diderot<br />
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| − | 29/03 : I Invitation to CAGI6 meeting (Challenge Critical Assessment of Genome Interpretation VIth version) : results to be announced<br />
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| − | 18/02 : Work meetings with SDC, CSIP, FEMTO-ST, Mob-ion and AAQIUS in the context of project AI-ReFuel ANR 2022 (preparation of a detailed proposal for the transition to phase 2), Ali Ayadi project coordinator.<br />
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| − | 23/02 : Meeting with Laurence Choulier (faculté de pharmacie) to discuss potential co-supervision of thesis (Quentin Rott), Julie Thompson, Odile Lecompte <br />
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| − | 24/02 : Meeting with Prof. Bourcier and Emilia Koestel, Ophtalmologue, CHU de Strasbourg to discuss potential collaboration as a follow-up of project Myo-XIA, with Corentin Meyer, Julie Thompson, Olivier Poch, Pierre Collet <br />
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| − | 03-07/01 : Participation (online) of J.-S. Sereni at the colloque Graph Theory à Oberwolfach (Allemagne) <br />
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| − | 17/01 : Participation of O. Lecompte in the meeting organised by european consortium ERGA (European Reference Genome ATlas)<br />
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| − | 18-19/01 : Meeting Institut de Myologie Paris; Project: AI and multi-level knowledge base for the diagnosis of congenital myopathies (Corentin Meyer/Olivier Poch/Kirsley Chennen)<br />
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| − | 21/01 : Meeting with CInflows e-solutions for medical workflows, on the use of AI to determine the size of heart valves and on the anonymization of medical files<br>
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| − | 24/01 : Meeting with Urania Therapeutics, on the creation of a knowledge base dedicated to therapies for genetic diseases with false-sense technology of 'Read-Through' molecules within ribosomes (Olivier Poch/Kirsley Chennen/Nicolas Haas)<br />
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| | = Visitors = | | = Visitors = |
| − | 18-19/08 : Visit of Mikhail Isaev (School of Mathematics, Monash University)<br />
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| − | 18/08 : Presentation by M. Isaev at the séminaire de calcul stochastique (IRMA) : <em>The expected number of spanning trees in random graphs with given degrees</em>. <br />
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| − | 18-22/07 : Visit of Ugo Giocanti (G-SCOP, Université Grenoble Alpes)<br />
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| − | 25-29/04 : Visit of Z. Dvořák & B. Moore (Université Charles de Prague, République tchèque)<br />
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| − | 07-11/02 : Visit of J. Volec (Czech Technical University, République tchèque). <br />
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| − | 10/02 : Presentation by J. Volec at the séminaire de calcul stochastique (IRMA) : <em>Graph limits, common graphs and Sidorenko's conjecture</em>. <br />
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| | = Doctoral students = | | = Doctoral students = |
| − | 13/06 : Presentation for the PhD monitoring committee by Hiba Khodji, co-supervised by Pierre Collet / Anne Jeannin and Julie Thompson<br />
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| − | 15/06 : Presentation for the PhD monitoring committee by Christelle Rutz, supervised by Odile Lecompte<br />
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| − | 20/06 : Presentation for the PhD monitoring committee by Alix Simon, co-supervised by Jocelyn Laporte (IGBMC) and Julie Thompson<br />
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| − | 24/05 : PhD defense of Anna Leonteva 'Evolutionary and Quantum-inspired Algorithms for the Optimization of Magnetic Cooling Systems', co-supervised by Pierre Collet, Pierre Parrend and Anne Jeannin<br />
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| − | 30/05 : Presentation for the PhD monitoring committee by Corention Meyer, co-supervised by Olivier Poch and Pierre Collet<br />
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| − | 01/03 : Start of PhD of Lena Bonassin - supervisor: O. Lecompte, co-supervisor: K. Theissinger (Francfort)<br />
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| − | 01/03 : Start of PhD of Ljudevit Luka Boštjančić - supervisor: K. Theissinger (Francfort), co-supervisor: O. Lecompte<br />
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| − | 11/01 : Start of PhD by Julien Michel on the project Damiage, supervised by Pierre Parrend (programme RAPID, led by EPITA) <br />
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| − | 25/01 : Work session 'Anomaly detection in networks' with PhD and post-doc students of 'Réseau' team (Cristel Pelsser) and CSTB (Pierre Parrend)<br />
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| | = Internships = | | = Internships = |
| − | 01/06 : Début du stage volontaire L2 de Inès Wurch (Science de la vie, biologie moléculaire) encadrée par Julie Thompson, Nicolas Scalzitti et Corentin Meyer<br />
| + | 11/03 : Start of internship of Jérémie Carabin, M2 BSIB Supervisors: Kirsley Chennen and Olivier Poch<br /> |
| − | 01/06 : Début du stage volontaire L2 de Jérémie Carabin (Science de la vie, biologie moléculaire) encadré par Julie Thompson, Olivier Poch<br />
| + | 11/03 : Start of internship of Mathilda Moser, M1 BSIB Supervisor: Odile Lecompte<br /> |
| − | 06/06 : Début du stage de Pierre Michel, M1 SdV, Biologie structurale intégrative et bio-informatique, Université de Strasbourg encadré par Julie Thompson, Kirsley Chennen, Nicolas Scalzitti<br />
| + | 11/03 : Start of internship of Marie Siroux, M1 BSIB Supervisor: Kirsley Chennen<br /> |
| − | <br /> | + | 11/03 : Start of internship of Céline Masson, M1 BSIB Supervisor: Julie Thompson<br /> |
| − | | + | 01/02 : Start of internship of Adem Boukhari, M2 Intelligence en données de santé, Supervisor: Kirsley Chennen<br /> |
| − | 01/04 : End of Freezer project, with EPITA students (reaction tool in case of computer attack, which allows to prevent the connection of new users, the opening of new network accesses), supervised by Pierre Parrend<br /> | + | 01/02 : Start of internship of Hugues Petitjean, ICAM Data Scientist, Supervisor: Kirsley Chennen<br /> |
| | + | 07/01 : Start of internship of Zephyrin Enaux, M2 BSIB. Supervisors: Julie Thompson and Anne Jeannin-Girardon<br /> |
| | + | 07/01 : Start of internship of Laura Billard, M1 Biologie Santé. Supervisor: Kirsley Chennen <br /> |
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| − | 01/03 : Start of M2 internship by Henri Joel Azemena (Université de Lorraine) supervised by Ali Ayadi<br />
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| − | 28/02 : Start of M1 internship by Tuba Uslu (Master Biologie Structurale Intégrative et Bionformatique) supervised by Julie Thompson <br />
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| − | 28/02 : Start of internship by Souliman El Moussaoui (ECAM formation Data Science) supervised by Julie Thompson, Kirlsey Chennen, Nicolas Scalzitti, collaboration Jean Muller, Laboratoire de diagnostic génétique, CHU de Strasbourg <br />
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| − | 28/02 : Start of M1 internship by Timothé Benoît (Master Biologie Structurale Intégrative et Bionformatique) supervised by Claudine Mayer <br />
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| − | 28/02 : Start of M1 internship by Anthony Seyller (Master Biologie Structurale Intégrative et Bionformatique) supervised by Claudine Mayer and Kirsley Chennen <br />
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| − | 28/02 : Start of M2 internship by Khayala Gaybaliyeva, M2 Sciences de Données et Intelligence Artificielle, Université Franco-Azerbaidjanaise, supervised by Nathalie Al Makdessi<br />
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| − | 28/02 : Start of M2 internship by Mahir Israyilov, M2 Sciences de Données et Intelligence Artificielle, Université Franco-Azerbaidjanaise, supervised by Ali Ayadi, Anne Jeannin-Girardon and Pierre Collet<br />
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| − | 03/01 : Start of M2 internship by Dorine Merlat (Master Biologie Structurale Intégrative et Bionformatique) supervised by O. Lecompte <br />
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| − | 03/01 : Start of M2 internship by Nicolas Haas (Master Biologie Structurale Intégrative et Bionformatique) supervised by O. Poch and K. Chennen <br />
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| − | 03/01 : Start of M2 internship by Arthur Vogt (Master Biologie Structurale Intégrative et Bionformatique) supervised by C. Mayer <br />
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| | = Administrative activities = | | = Administrative activities = |
| − | 23/06 : Meeting to discuss the evolution of the Schéma Directeur du Numérique (J. Thompson)<br />
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| − | 24/06 : Steering committee, Science Ouverte de l'Unistra (J. Thompson)<br />
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| − | 23/05 : Preparatory meeting for UnivOAK 2 (Julie Thompson)<br />
| + | = Miscellaneous = |
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| − | 05/04 : Meeting of steering committee Mentorat en Alsace - Université de Strasbourg and Université de Haute Alsace (O. Lecompte)<br />
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| − | 08/04 : Meeting of steering committee Open Science Unistra (J. Thompson)<br />
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| − | 28/04 : Meeting with Société Urania Therapeutics-CSTB in the context of application for PhD funding CIFRE : "Development of an artificial intelligence algorithm dedicated to trans-reading therapies: Application to rare genetic diseases" (25/04/2022) (N. Haas, K. Chennen, O. Poch) <br />
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| − | 09/03 : Meeting with Urania Therapeutics to discuss the scope of a PhD funding CIFRE (Olivier Poch, Kirsley Chennen, Nicolas Hass, Jean-Paul Renaud)<br />
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| − | 14/03 : Meeting to discuss participation of CSTB in the UE Master Omiques, Bioinbfo, données de santé (Olivier Poch, Kirsley Chennen, Agnes Bloch-Zupan)<br />
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| − | 24/03 : Submission of project ANR Correau on the cybersecurity of water networks (Pierre Parrend)<br />
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| − | 28/03 : Meeting with Google Cloud to discuss a possible collaboration on the OrthoInspector project, and use of IA for integration of 3D structure data in the analysis of genetic variants (Olivier Poch, Kirsley Chennen, Arnaud Kress, Julie Thompson, Pierre Collet) <br />
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| − | 31/03 : Meeting with Professor Seiamak BAHRAM, PUPH Immunologie biologique, and Vincent Noblet, to discuss a possible collaboration on a project in AI analysis of multi-omics data (Julie Thompson, Olivier Poch, Pierre Collet).<br />
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| − | 02-03/02 : Organisation of meetings Coalition Café (en ligne) by S. Cambie, R. J. Kang, J.-S. Sereni & Y. Yuditski<br />
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| − | 04/02 : End of project MedCTF - medical data management application for cybersecurity challenge, internship of Tayyip Gedik (supervised by Pierre Parrend) <br />
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| − | 09/02 : Submission of a response to Appel à manifestation d’intérêt - Chaire de professeur junior "GROOT: atlas of Gene RepertOire evOluTion", Odile Lecompte <br />
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| − | 16/02 : Submission of a pre-proposal "RAinMARK : New tools and predictive markers for better patient care and treatment solutions in MCOPS12" to AP European Joint Programme Rare Diseases, in collaboration with Wojciech KREZEL, IGBMC <br />
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| − | 16/02 : Submission of a pre-proposal "Development of new analytic tools and pathways to accelerate diagnosis and facilitate diagnostic monitoring of rare diseases" to AP European Joint Programme Rare Diseases, in collaboration with Amélie Piton, IGBMC. <br />
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| − | 21/02 : Meeting to prepare project Correau, ANR phase 2 (INRAE, Eurométropole, CNAM, ICube)<br />
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| − | 25/02 : Acceptation of project RARETIA ANR-20-MRB-00XX-03 (ANR/Investissements d'Avenir: Accelerating Research and Innovation on Rare Diseases through Databases)<br />
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| − | 11/01 : Annual meeting of French Bioinformatics Institute, to discuss roadmap for 2022-2027 <br />
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| − | 20/01 : Meeting to prepare project for European Joint Programme RARE DISEASES (Olivier Poch/Kirsley Chennen)<br />
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| − | 31/01 : Meeting to prepare project RDG AMI Atelier de la donnée (Julie Thompson)<br />
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| − | = Miscellaneous =
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| − | 17/05 : Installation of our servers in the DataCenter <br />
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| | '''(*) Every Tuesday 13h30 to 15h30'''<br /> | | '''(*) Every Tuesday 13h30 to 15h30'''<br /> |
| − | 1st Tuesday of the month : Reports of members A-G<br /> | + | 1st Tuesday of the month : Reports of members A-M<br /> |
| − | 2nd Tuesday of the month : Reports of members H-N<br /> | + | 2nd Tuesday of the month : Journal Club<br /> |
| − | 3rd Tuesday of the month : Reports of members O-Z<br /> | + | 3rd Tuesday of the month : Reports of members M-Z<br /> |
| | 4th Tuesday of the month : Meeting for permanent members<br /> | | 4th Tuesday of the month : Meeting for permanent members<br /> |
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| − | Last Thusrday of the month at 14h00 : Presentations of trainees/students followed by questions (2 to 3 presentations of 12 min for trainees and 1st and 2nd year PhD students, 20 min for 3rd year PhD students).<br />
| + | Every second Tuesday at 15h00 : Presentations of trainees/students followed by questions (2 to 3 presentations of 12 min for trainees and 1st and 2nd year PhD students, 20 min for 3rd year PhD students).<br /> |
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| − | 25/04 : (*) Session "Jeun's" Presentations by Quentin Christoffel, Nicolas Haas and Arthur Vogt<br />
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| − | 06/04 : (*) Session "Jeun's" Presentations by Dorine Merlat, Tuba Uslu, Thimothé Benoit and Antony Seyller<br />
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| − | 27/01 : (*) Session "Jeun's" Presentations by Lalla Aicha Koné and Yohan Solon<br />
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| − | [[fr:Activites]] | + | [[fr:Faits_marquants]] |
