Collaborations

International collaborations

Our main collaborations with international consortia and teams include :

• Consortium international Quest for Orthologs (QFO) since 2011 : with ETH Zurich, Swiss Institute of Bioinformatics, Centre for Genomic Regulation (Barcelona Institute of Science and Technology), European Molecular Biology Laboratory (EMBL, Heildelberg), European Bioinformatics Institute, Institute of Molecular Life Science/University of Zurich, University of California, Lawrence Berkeley National Laboratory, University of Southern California, Science for Life Laboratory/ Stockholm University, University of Lausanne, University College of London, Center for Plant Systems Biology/Ghent University, Barcelona Supercomputing Center, The University of Tokyo, University of Oxford, University of Barcelona, University of Montpellier, Goethe University Frankfurt, Tokyo Institute of Technology, Institució Catalana de Recerca i Estudis Avançats, National Institutes of Natural Sciences (Okazaki).
• LOEWE Centre for translational biodiversity genomics (Francfort) since 2019, with in particular the obtaining of ANR PRCI funding (ANR/DFG) in 2021.
• Swiss Institute of Bioinformatics/University of Lausanne since 2020
• Consortium européen ERGA (European Reference Genome Atlas) since 2021 : with The Rockfeller University, Senckenberg Biodiversity and Climate Research Centre, University of Cambridge, Centre for Ecology, Evolution and Environmental Change (Portugal), Universita degli Studi di Milano, University of Göttingen, University of Florence, Uppsala University, University of Liege, University of Oslo, University of Cologne, Barcelona Institute of Science and Technology, University of Porto, Queen Mary University of London, University of Lausanne
• Université de Mannheim since 2013, on the mathematical coding of genes
• Consortium européen Elixir, bioinformatics services and resources , project H2020, 22 member countries and over 220 research organizations
• Université de Nouakchott Al Aasria, Mauritanie, Implementation of a PARSEC supercomputer in the University's Computing Grid, ongoing collaboration via a PhD student
• Co-craation 2016 and operational co-direction of l’Université Franco-Azerbaidjanaise (UFAZ) - with Université du Pétrole ASOIU.

National collaborations

At the national level, we maintain close collaborations with :

• Station Biologique de Roscoff/ Sorbonne Universités
• Institut Français de Bioinformatique, network of 21 bioinformatics platforms
• Université de Lille, statistics for phylogenesis
• Université de Montpellier, comparative genomic analysis
• CEDRIC, Conservatoire National des Arts et Métiers, algorithms for the detection of complex attacks
• Laboratoire MSAP (Miniaturisation pour la Synthèse, l'Analyse et la Protéomique (MSAP) UAR 3290), Université de Lille

Local collaborations

At the regional level, our main collaborations include :

• Laboratoire de Génétique Médicale/Institut de Génétique Médicale d'Alsace, INSERM U1112
• IBMC. Team Régulations post-transcriptionnelles et nutrition
• IBMC. Team Marie Sissler, analysis of genetic variants
• IGBMC. Team Jocelyn Laporte, analysis of genetic variants
• IGBMC. Team Amélie Piton, analysis of genetic variants
• IGBMC. Team Jean-Louis Mandel. protection of genetic variant data
• UMR CNRS 7021 : Natacha Entz-Werlé, transcriptomic analysis of gliomas
• INSERM 1109 : Olivier Huck, ranscriptomic analysis of infected macrophages
• Université de Strasbourg : Dominique Guénot. Team Progression Tumorale et Microenvironnement, Approches Translationnelles et Epidémiologie, bioinformatics analysis of colon cancer

Internal collaborations

We also work with other ICube teams, including :

• SDC, cco-supervision of PhD students and trainees
• IMAGes, web server for statistical services, API project co-leader
• CSIP, migration of services to the Data Center
• Réseaux, Interconnection of research platforms on anomaly detection in the Internet of Things

Archive des collaborations