CSTB team: Complex Systems and Translational Bioinformatics

Anne Jeannin

From CSTB team: Complex Systems and Translational Bioinformatics
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Associate professor in computer science, at the The Engineering science, computer science and imaging laboratory of the University of Strasbourg (ICube UMR CNRS 7357)


Research

TL;DR : I am interested in Complex Systems, in the broadest possible sense. More specifically, I am interested in deep learning and massive parallel computing; complex systems modeling, behavior modeling.

All my research revolve (or have revolved) around Complex Systems. Today, I am in particular interested in deep learning and massive parallel computing. The application domains of those research are quite diverse, ranging from educational ecosystems (POEM), computing ecosystems (EASEA), health ecosystems (HOPE, RADAR), simulation platforms, to a unifying ecosystem, the CS-DC, that aims to share research and educational resources to address the challenges of the Complex Systems science.

The main problems that we study are : reliable and robust computerization of medical files (and more generally all kind of digital resources); data mining; how to set up intelligent platforms relying on human intelligence (which is way better than machine intelligence :-) to determine optimal educational trajectories and to create knowledge maps; securing and detect anomalies in IT systems.

I'm also interested in smaller projects, still being defined, slowly blooming, but that may give rise to little somethings some day : piloting evolutionary algorithms with deep learning algorithms; estimate optimal cluster number of unlabelled data with massive parallelism; integrative modeling of biological systems, using EASEA principle to analyse high throughput DNA sequences.

Publications

Publication list


Involvement in research projects

  • Education : POEM / Magellan / In-tuto
  • Health : HOPE / RADAR
  • Computing : EASEA CLOUD
  • CS-DC
  • Computational Biology : GEM (Germinal center Modeling)

Click HERE to get some information about former projects


Scientific supervision

Students in apprenticeship training

Internships

  • Genetic regulation networks modeling in B cells (6 month - 2017)
  • Concentric multi-valued map (2017)

Teaching

  • Introduction to web programming
  • English for computer science
  • Object oriented programming
  • Artificial intelligence and deep learning


  • Algorithms and programming
  • Certificat informatique et internet Information technology and internet certification preparation (C2i)
  • IT environments
  • Programming langages
  • Fundamental algorithmic and graphs
  • Advanced C programming
  • Java programming and development tools
  • IP networks
  • Cognitive and reactive modeling
  • Compilation, models and langages for parallel systems


Administrative and scientific responsibilities

  • Member of the board of the Mathematics and Computer Science faculty of the University of Strasbourg since Dec. 2017
  • Pedagogical coordinator of the bachelor degree in Computer Science of the French-Azerbaijani University (UFAZ) since Sept. 2017
  • Member of the Computer Science expert committee of Strasbourg University since Sept. 2016
  • Member of the selection committee for an associate prof. position at Robert Schuman IUT (2017)
  • Reviewer for the journal AIMS Cell and Tissue Engineering (2017)
  • Member of the program and the organization committees of the conference EA 2017
  • Reviewer for the conference ICAROB 2018
  • Scientific expertise of CIFRE (Conventions Industrielles de Formation par la Recherche : Industrial Conventions of Training through Research) PhD
  • Scientific expertise for the BioWin business cluster (2017)


Contact

My office is located on 4 rue Kirschleger in Strasbourg, on the 5th floor of the building 3 of the medicine faculty (CSTB team).

Anne Jeannin-Girardon
ICUBE - UMR CNRS 7357
Tél : +33 (0)3.68.85.45.80 / Fax : +33 (0)3.68.85.44.55
4 rue Kirschleger, 67000 Strasbourg, France
Online form contact