Activites archives
Archives of team news
Scientific highlights
20/12: Validation of organisation of the first CCE'23 (Complex Computational Ecosystems) conference at UFAZ, Baku (24-27 April 2023)
2/11: start of thesis 'Contrat doctoral Grand-Est/EPITA' of Majed Jaber 'Structural and spectral analysis of dynamic graphs for attack detection' (Co-supervisors: Pierre Parrend, Aline Deruyver; Nicolas Boutry, EPITA Paris)
09/11 : HDR defense by Anne Jeannin-Girardon, titled "Contributions à une approche épistémologique de l’intelligence artificielle"
10/11 : Thesis defense by Romain Orhand, titled "Vers une Intelligence Artificielle Autonome et Explicable pour des Environnements Incertains"
25/11 : Participation at AFSCET workshop Catégorisation et IA : Vision du monde et action sur le monde by Pierre Collet
17 - 20 / 10 : HCERES Evaluation of ICUBE and CSTB team
17/10 : Project submitted to ANR Science avec et pour la société – Recherches participatives 1 (SAPS-RA-RP1) 'GenIDA - Génétique de la Déficience Intellectuelle et des troubles du spectre Autistique' withPauline Burger, IGBMC.
14/10 : Project submitted for Junior Chair 'Atlas comparatif des répertoires de gènes et relations génotype-phénotype' by Odile Lecompte.
14/10 : Thesis jury of Marwa Ben M'Barek, Université PSL titled "Détection de communautés dans les grands réseaux : Application aux réseaux d'interactions de gènes" (Pierre Collet)
13/10 : Work meeting with Emmanuelle Leize (Laboratoire de Spectrométrie de Masse des Interactions et des Systèmes) po discuss a project to use AI approaches in proteomics. J. Thompson, K. Chennen.
08/10 : Work meeting with SDC (Nicolas Lachiche, Gabriel Frey) to discuss the results of doctoral student Hajer Zekri. J. Thompson, K. Chennen.
04/10 : Oral presentation by Dorine Merlat at conference Biodiversity Genomics 2022
29/09 - Arrival of Ali Khudiyev (UFAZ doctoral student co-supervised by Université du Pétrole en Azerbaidjan), co-supervisors Pierre Collet, Latafat Gardashova, Rabih Amhaz
15/09 - Arrival of Rauf Fatali (UFAZ octoral student co-supervised by Université du Pétrole en Azerbaidjan), co-supervisors Aline Deruyver - Latafat Gardashova, Rabih Amhaz
17/09 - 18/09 : Participation of O. Lecompte at conference Quest for Orthologs/ECCB (Sitges, Espagne)
26/09 : Participation of O. Lecompte in HDR jury of Camille Berthelot (Institut Pasteur)
29/08 - 2/09 : Participation at workshop distance learning organised by Jean-Luc Patry at Université de Vienne
16/08 : Project accepted by ANR : CoRReau (aqua-terrorism aimed at compromising the availability and quality of drinking water in a city) (Pierre Parrend)
14/08 : Validation of a regional grant XDGMed (P. Parrend, A. Deruyver)
01/07 : Participation of J.-S. Sereni in the PhD jury of Hoang La, LIRMM, Université de Montpellier
06/07 : Presentation at International Conference on Graph Theory: Spanning trees in regular graphs (J.-S. Sereni)
03/06 : Meeting with Google Cloud to present the OrthoInspector project, and use of IA for intégration of 3D structures in the analysis of genetic variants (Olivier Poch, Kirsley Chennen, Arnaud Kress, Julie Thompson)
10/06 : Participation of J.-S. Sereni in the PhD jury of Yitting Jiang, IRIF, Université de Paris
15/06 : Presentation at the doctoral school day of the UHA in Mulhouse : "Intelligence Artificielle : de la technique aux enjeux sociaux" (Anne Jeannin-Girardon)
16-17/06 : Kickoff meeting of the project Atelier de la Donnée, Unistra ADELE Helpdesk (J. Thompson)
17/05 : Seminar by Kirsley Chennen : Printemps de la donnée, les données dans la thèse, organisé par l'Université de Strasbourg et l'Université de Haute-Alsace
20/05 : Team seminar 'une éthique pour le 21è siècle', Pierre Collet
04-08/04 : Online colloque "Directed Minors & Digraphs Structure Theory", organised by J.-S. Sereni, R. Steiner & S. Wiederrecht in the context of the network « A Sparse (Graphs) Coalition
05/04 : Meeting with SDC team (N. Lachiche, G. Frey) : graph-based analysis of biological networks
20/04 : RMeeting Institut Francais de Bioinformatique, GT Bioinfo Santé (K. Chennen, J. Thompson)
22/04 : Poster presentations at Doctoral School days for Sciences de la Vie et de la Santé (C. Rutz, C. Meyer)
25/04 : First meeting of GT RDA (Research Data Alliance) Strasbourg (J. Thompson)
29/04 : First meeting of GT Données EST, RDG (Recherche Data Gouv) : 'Atelier de la donnée' projects (J. Thompson)
02/03 : Project RainRARE, transcriptomic data reception and analysis ((Wojciech Krezel, Kirsley Chennen)
14/03 : Participation of O. Lecompte in the HDR jury of Anaïs Bardet, Université de Strasbourg
16/03 : Meeting NMD (Non-Sens mediated mRNA decay) - Thérapies de Translecture (Olivier Poch, Kirsley Chennen, Nicolas Hass, Jean-Paul Renaud, Fabrice Lejeune)
23-24/03 : Kick-off meeting of ANR PRCI GEODE at LOEWE Centre for Translational Biodiversity Genomics (Francfort) (O. Lecompte, C Rutz, D Merlat)
23/03 : Participation of J. Thompson in the HDR jury of Pierre Poulain, Université de Paris Diderot
29/03 : I Invitation to CAGI6 meeting (Challenge Critical Assessment of Genome Interpretation VIth version) : results to be announced
18/02 : Work meetings with SDC, CSIP, FEMTO-ST, Mob-ion and AAQIUS in the context of project AI-ReFuel ANR 2022 (preparation of a detailed proposal for the transition to phase 2), Ali Ayadi project coordinator.
23/02 : Meeting with Laurence Choulier (faculté de pharmacie) to discuss potential co-supervision of thesis (Quentin Rott), Julie Thompson, Odile Lecompte
24/02 : Meeting with Prof. Bourcier and Emilia Koestel, Ophtalmologue, CHU de Strasbourg to discuss potential collaboration as a follow-up of project Myo-XIA, with Corentin Meyer, Julie Thompson, Olivier Poch, Pierre Collet
03-07/01 : Participation (online) of J.-S. Sereni at the colloque Graph Theory à Oberwolfach (Allemagne)
17/01 : Participation of O. Lecompte in the meeting organised by european consortium ERGA (European Reference Genome ATlas)
18-19/01 : Meeting Institut de Myologie Paris; Project: AI and multi-level knowledge base for the diagnosis of congenital myopathies (Corentin Meyer/Olivier Poch/Kirsley Chennen)
21/01 : Meeting with CInflows e-solutions for medical workflows, on the use of AI to determine the size of heart valves and on the anonymization of medical files
24/01 : Meeting with Urania Therapeutics, on the creation of a knowledge base dedicated to therapies for genetic diseases with false-sense technology of 'Read-Through' molecules within ribosomes (Olivier Poch/Kirsley Chennen/Nicolas Haas)
Visitors
18-19/08 : Visit of Mikhail Isaev (School of Mathematics, Monash University)
18/08 : Presentation by M. Isaev at the séminaire de calcul stochastique (IRMA) : The expected number of spanning trees in random graphs with given degrees.
18-22/07 : Visit of Ugo Giocanti (G-SCOP, Université Grenoble Alpes)
25-29/04 : Visit of Z. Dvořák & B. Moore (Université Charles de Prague, République tchèque)
07-11/02 : Visit of J. Volec (Czech Technical University, République tchèque).
10/02 : Presentation by J. Volec at the séminaire de calcul stochastique (IRMA) : Graph limits, common graphs and Sidorenko's conjecture.
Doctoral students
10/10 : Thesis monitoring committee of Luka Ljudevit Boštjančić, co-supervised by Odile Lecompte 13/10 : Thesis monitoring committee of Lena Bonassin, co-supervised by Odile Lecompte 01/10 : Start of thesis of Dorine Merlat (Supervisor : O. Lecompte) 01/10 : Start of thesis of Nicolas Haas (Supervisor : O. Poch)
13/06 : Presentation for the PhD monitoring committee by Hiba Khodji, co-supervised by Pierre Collet / Anne Jeannin and Julie Thompson
15/06 : Presentation for the PhD monitoring committee by Christelle Rutz, supervised by Odile Lecompte
20/06 : Presentation for the PhD monitoring committee by Alix Simon, co-supervised by Jocelyn Laporte (IGBMC) and Julie Thompson
24/05 : PhD defense of Anna Leonteva 'Evolutionary and Quantum-inspired Algorithms for the Optimization of Magnetic Cooling Systems', co-supervised by Pierre Collet, Pierre Parrend and Anne Jeannin
30/05 : Presentation for the PhD monitoring committee by Corention Meyer, co-supervised by Olivier Poch and Pierre Collet
01/03 : Start of PhD of Lena Bonassin - supervisor: O. Lecompte, co-supervisor: K. Theissinger (Francfort)
01/03 : Start of PhD of Ljudevit Luka Boštjančić - supervisor: K. Theissinger (Francfort), co-supervisor: O. Lecompte
11/01 : Start of PhD by Julien Michel on the project Damiage, supervised by Pierre Parrend (programme RAPID, led by EPITA)
25/01 : Work session 'Anomaly detection in networks' with PhD and post-doc students of 'Réseau' team (Cristel Pelsser) and CSTB (Pierre Parrend)
Internships
01/06 : Start of volontary L2 internship by Inès Wurch (Science de la vie, biologie moléculaire) supervised by Julie Thompson, Nicolas Scalzitti et Corentin Meyer
01/06 : Start of volontary L2 internship by Jérémie Carabin (Science de la vie, biologie moléculaire) supervised by Julie Thompson, Olivier Poch
06/06 : Start of M1 internship by Pierre Michel, SdV, Biologie structurale intégrative et bio-informatique, Université de Strasbourg supervised by Julie Thompson, Kirsley Chennen, Nicolas Scalzitti
01/04 : End of Freezer project, with EPITA students (reaction tool in case of computer attack, which allows to prevent the connection of new users, the opening of new network accesses), supervised by Pierre Parrend
01/03 : Start of M2 internship by Henri Joel Azemena (Université de Lorraine) supervised by Ali Ayadi
28/02 : Start of M1 internship by Tuba Uslu (Master Biologie Structurale Intégrative et Bionformatique) supervised by Julie Thompson
28/02 : Start of internship by Souliman El Moussaoui (ECAM formation Data Science) supervised by Julie Thompson, Kirlsey Chennen, Nicolas Scalzitti, collaboration Jean Muller, Laboratoire de diagnostic génétique, CHU de Strasbourg
28/02 : Start of M1 internship by Timothé Benoît (Master Biologie Structurale Intégrative et Bionformatique) supervised by Claudine Mayer
28/02 : Start of M1 internship by Anthony Seyller (Master Biologie Structurale Intégrative et Bionformatique) supervised by Claudine Mayer and Kirsley Chennen
28/02 : Start of M2 internship by Khayala Gaybaliyeva, M2 Sciences de Données et Intelligence Artificielle, Université Franco-Azerbaidjanaise, supervised by Nathalie Al Makdessi
28/02 : Start of M2 internship by Mahir Israyilov, M2 Sciences de Données et Intelligence Artificielle, Université Franco-Azerbaidjanaise, supervised by Ali Ayadi, Anne Jeannin-Girardon and Pierre Collet
03/01 : Start of M2 internship by Dorine Merlat (Master Biologie Structurale Intégrative et Bionformatique) supervised by O. Lecompte
03/01 : Start of M2 internship by Nicolas Haas (Master Biologie Structurale Intégrative et Bionformatique) supervised by O. Poch and K. Chennen
03/01 : Start of M2 internship by Arthur Vogt (Master Biologie Structurale Intégrative et Bionformatique) supervised by C. Mayer
Administrative activities
01/12 : First meeting of Coalition for Advancing Research Assessment (COARA) (J. Thompson)
01/12 : Meeting of Research Data Alliance (RDA) at Université de Strasbourg (J. Thompson)
21/11 : Steering committee Mentorat en Alsace (O. Lecompte)
23/11 : Réunion pour l'organisation d'une école de printemps IA Alsace Tech (O. Lecompte)
22/11 : Steering committee Science Ouverte de l'Unistra (J. Thompson)
24/11 : Steering committee Atelier de la donnée ADELE (J. Thompson)
14/10 : Steering committee Science Ouverte de l'Unistra (J. Thompson)
24/10 : RDA organisational assembly (J. Thompson)
25/10 : Meeting collège EOSC France (J. Thompson)
04/10 : Steering committee Mentorat en Alsace (O. Lecompte)
28/09 : RDA organisational assembly (J. Thompson)
23/06 : Meeting to discuss the evolution of the Schéma Directeur du Numérique (J. Thompson)
24/06 : Steering committee, Science Ouverte de l'Unistra (J. Thompson)
23/05 : Preparatory meeting for UnivOAK 2 (Julie Thompson)
05/04 : Meeting of steering committee Mentorat en Alsace - Université de Strasbourg and Université de Haute Alsace (O. Lecompte)
08/04 : Meeting of steering committee Open Science Unistra (J. Thompson)
28/04 : Meeting with Société Urania Therapeutics-CSTB in the context of application for PhD funding CIFRE : "Development of an artificial intelligence algorithm dedicated to trans-reading therapies: Application to rare genetic diseases" (25/04/2022) (N. Haas, K. Chennen, O. Poch)
09/03 : Meeting with Urania Therapeutics to discuss the scope of a PhD funding CIFRE (Olivier Poch, Kirsley Chennen, Nicolas Hass, Jean-Paul Renaud)
14/03 : Meeting to discuss participation of CSTB in the UE Master Omiques, Bioinbfo, données de santé (Olivier Poch, Kirsley Chennen, Agnes Bloch-Zupan)
24/03 : Submission of project ANR Correau on the cybersecurity of water networks (Pierre Parrend)
28/03 : Meeting with Google Cloud to discuss a possible collaboration on the OrthoInspector project, and use of IA for integration of 3D structure data in the analysis of genetic variants (Olivier Poch, Kirsley Chennen, Arnaud Kress, Julie Thompson, Pierre Collet)
31/03 : Meeting with Professor Seiamak BAHRAM, PUPH Immunologie biologique, and Vincent Noblet, to discuss a possible collaboration on a project in AI analysis of multi-omics data (Julie Thompson, Olivier Poch, Pierre Collet).
02-03/02 : Organisation of meetings Coalition Café (en ligne) by S. Cambie, R. J. Kang, J.-S. Sereni & Y. Yuditski
04/02 : End of project MedCTF - medical data management application for cybersecurity challenge, internship of Tayyip Gedik (supervised by Pierre Parrend)
09/02 : Submission of a response to Appel à manifestation d’intérêt - Chaire de professeur junior "GROOT: atlas of Gene RepertOire evOluTion", Odile Lecompte
16/02 : Submission of a pre-proposal "RAinMARK : New tools and predictive markers for better patient care and treatment solutions in MCOPS12" to AP European Joint Programme Rare Diseases, in collaboration with Wojciech KREZEL, IGBMC
16/02 : Submission of a pre-proposal "Development of new analytic tools and pathways to accelerate diagnosis and facilitate diagnostic monitoring of rare diseases" to AP European Joint Programme Rare Diseases, in collaboration with Amélie Piton, IGBMC.
21/02 : Meeting to prepare project Correau, ANR phase 2 (INRAE, Eurométropole, CNAM, ICube)
25/02 : Acceptation of project RARETIA ANR-20-MRB-00XX-03 (ANR/Investissements d'Avenir: Accelerating Research and Innovation on Rare Diseases through Databases)
11/01 : Annual meeting of French Bioinformatics Institute, to discuss roadmap for 2022-2027
20/01 : Meeting to prepare project for European Joint Programme RARE DISEASES (Olivier Poch/Kirsley Chennen)
31/01 : Meeting to prepare project RDG AMI Atelier de la donnée (Julie Thompson)
Miscellaneous
17/05 : Installation of our servers in the DataCenter
Team life
Team meetings
(*) Every Tuesday 13h30 to 15h30
1st Tuesday of the month : Reports of members A-G
2nd Tuesday of the month : Reports of members H-N
3rd Tuesday of the month : Reports of members O-Z
4th Tuesday of the month : Meeting for permanent members
Each Thursday at 14h00 : Presentations of trainees/students followed by questions (2 to 3 presentations of 12 min for trainees and 1st and 2nd year PhD students, 20 min for 3rd year PhD students).
25/04 : (*) Session "Jeun's" Presentations by Quentin Christoffel, Nicolas Haas and Arthur Vogt
06/04 : (*) Session "Jeun's" Presentations by Dorine Merlat, Tuba Uslu, Thimothé Benoit and Antony Seyller
27/01 : (*) Session "Jeun's" Presentations by Lalla Aicha Koné and Yohan Solon