CSTB team: Complex Systems and Translational Bioinformatics

Laetitia Poidevin

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Study engineer: Treatment and analysis of biological data, at the University of Strasbourg

My activity is mainly based on two axes:

  • Collect, manage, treate, analyse, query and display high-througput biological data.

GxDb (Gene eXpression DataBase), developed in collaboration with LBGI members, is a tool of management, automatic treatment, analysis and visualisation of transcriptomic experiments

  • Functional analysis

cascade of analysis in order to extract fonctional information from gene lists

Keywords: transcriptomics, database, programming, bioanalysis

My recent publications are available on the publication website of the laboratory.

Kole C, Berdugo N, Da Silva C, Aït-Ali N, Millet-Puel G, Pagan D, Blond F, Poidevin L, Ripp R, Fontaine V, Wincker P, Zack DJ, Sahel JA, Poch O, Léveillard T. Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells. PLoS One. 2016 Mar 17;11(3):e0150758.

Romand R, Ripp R, Poidevin L, Boeglin M, Geffers L, Dollé P, Poch O. Integrated annotation and analysis of in situ hybridization images using the ImAnno system: application to the ear and sensory organs of the fetal mouse. PLoS One. 2015 Feb 23;10(2):e0118024.

Allot A, Anno YN, Poidevin L, Ripp R, Poch O, Lecompte O. PARSEC: PAtteRn SEarch and Contextualization. Bioinformatics. 2013 Oct 15;29(20):2643-4.

Anamika K, Gyenis À, Poidevin L, Poch O, Tora L. RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts. PLoS One. 2012;7(6):e38769.

Luu TD, Rusu A, Walter V, Linard B, Poidevin L, Ripp R, Moulinier L, Muller J, Raffelsberger W, Wicker N, Lecompte O, Thompson JD, Poch O, Nguyen H. KD4v: Comprehensible Knowledge Discovery System for Missense Variant. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W71-5.

Fridlich R, Delalande F, Jaillard C, Lu J, Poidevin L, Cronin T, Perrocheau L, Millet-Puel G, Niepon ML, Poch O, Holmgren A, Van Dorsselaer A, Sahel JA, Léveillard T. The thioredoxin-like protein rod-derived cone viability factor (RdCVFL) interacts with TAU and inhibits its phosphorylation in the retina. Mol Cell Proteomics. 2009 Jun;8(6):1206-18.

Kalathur RK, Gagniere N, Berthommier G, Poidevin L, Raffelsberger W, Ripp R, Léveillard T, Poch O. RETINOBASE: a web database, data mining and analysis platform for gene expression data on retina. BMC Genomics. 2008 May 5;9:208.