Highlights
News
TEAM PRESENTATION
Team meetings
(*) Every Tuesday 13h30 to 15h30
1st Tuesday of the month : Reports of members A-G
2nd Tuesday of the month : Reports of members H-N
3rd Tuesday of the month : Reports of members O-Z
4th Tuesday of the month : Meeting for permanent members
Last Thusrday of the month at 14h00 : Presentations of trainees/students followed by questions (2 to 3 presentations of 12 min for trainees and 1st and 2nd year PhD students, 20 min for 3rd year PhD students).
May 2022
03-05: Meeting for permanent members
April 2022
01-04: End of Freezer project, with EPITA students (reaction tool in case of computer attack, which allows to prevent the connection of new users, the opening of new network accesses), supervised by Pierre Parrend
04/08-04: Online colloque « Directed Minors & Digraphs Structure Theory », organised by J.-S. Sereni, R. Steiner & S. Wiederrecht in the context of the network « A Sparse (Graphs) Coalition »
05-04 : Meeting of steering committee Mentorat en Alsace - Université de Strasbourg and Université de Haute Alsace (O. Lecompte)
05-04 : Group meeting A (A-K)
05-04 : Meeting with SDC team (N. Lachiche, G. Frey) : graph-based analysis of biological networks
06-04 : Presentations by students Dorine Merlat, Tuba Uslu, Thimothé Benoit and Antony Seyller
07-04 : Article submission to BMC Bioinformatics journal : "IMPatienT: an integrated web application to digitize, process and explore multimodal patient data; C. Meyer et al."
08-04 : Meeting of steering committee Open Science Unistra (J. Thompson)
12-04 : Article accepted in Nucleic Acids Research : Nevers et al. 'The Quest for Orthologs orthology benchmark service in 2022'
12-04 : Journal Club
14-04 : Article accepted in BMC Genomics : Boštjančić LL et al.'Host-pathogen coevolution drives innate immune response to Aphanomyces astaci infection in freshwater crayfish: transcriptomic evidence'
19-04 : Group meeting B (L-Z)
20-04 : Meeting Institut Francais de Bioinformatique, GT Bioinfo Santé (K. Chennen, J. Thompson)
21-04 : Article accepted in the conference AIAI2022 : Khodji et al. 'MERLIN: Identifying inaccuracies in Multiple Sequence Alignments using Object Detection'
22-04 : Poster presentations at Doctoral School days for Sciences de la Vie et de la Santé (C. Rutz, C. Meyer)
25-04 : First meeting of GT RDA (Research Data Alliance) Strasbourg (J. Thompson)
25-04 : Presentations by students Quentin Christoffel, Nicolas Haas and Arthur Vogt
25/29-04 : Visit of Z. Dvořák & B. Moore (Université Charles de Prague, République tchèque)
28-04 : Meeting with Société Urania Therapeutics-CSTB in the context of application for PhD funding CIFRE : "Development of an artificial intelligence algorithm dedicated to trans-reading therapies: Application to rare genetic diseases" (25/04/2022) (N. Haas, K. Chennen, O. Poch)
29-04 : First meeting of GT Données EST, RDG (Recherche Data Gouv) : 'Atelier de la donnée' projects (J. Thompson)
Mars 2022
01-03 : Meeting for permanent members
01-03 : Start of M2 internship by Henri Joel Azemena (Université de Lorraine) supervised by Ali Ayadi
01-03 : Start of PhD by Lena Bonassin - supervision : O. Lecompte, co-supervision : K. Theissinger (Francfort)
01-03 : Start of PhD by Ljudevit Luka Boštjančić - supervision : K. Theissinger (Francfort), co-supervision : O. Lecompte
01-03 : Two theses will start september 2022 co-supervised with Université ASOIU (Baku, Azerbaidjan)
02-03 : Project RainRARE, transcriptomic data reception and analysis ((Wojciech Krezel, Kirsley Chennen)
08-03 : Group meeting A (A-M)
09-03 : Meeting with Urania Therapeutics to discuss the scope of a PhD funding CIFRE (Olivier Poch, Kirsley Chennen, Nicolas Hass, Jean-Paul Renaud)
11-03: Communication accepted for RESSI (Rendez-Vous de la Recherche et de l'Enseignement de la Sécurité des Systèmes d'Information) 'Teaching Machine Learning for Cybersecurity', Pierre Parrend
14-03 : Meeting to discuss participation of CSTB in the UE Master Omiques, Bioinbfo, données de santé (Olivier Poch, Kirsley Chennen, Agnes Bloch-Zupan)
14-03 : Participation of O. Lecompte in the HDR jury of Anaïs Bardet, Université de Strasbourg
15-03 : Journal Club
16-03 : Meeting NMD (Non-Sens mediated mRNA decay) - Thérapies de Translecture (Olivier Poch, Kirsley Chennen, Nicolas Hass, Jean-Paul Renaud, Fabrice Lejeune)
22-03 : Group meeting B (N-Z)
23 et 24-03 : Kick-off meeting of ANR PRCI GEODE at LOEWE Centre for Translational Biodiversity Genomics (Francfort) (O. Lecompte, C Rutz, D Merlat)
23-03 : Participation of J. Thompson in the HDR jury of Pierre Poulain, Université de Paris Diderot
24-03 : Submission of project ANR Correau on the cybersecurity of water networks (Pierre Parrend)
28-03 : Meeting with Google Cloud to discuss a possible collaboration on the OrthoInspector project, and use of IA for integration of 3D structure data in the analysis of genetic variants (Olivier Poch, Kirsley Chennen, Arnaud Kress, Julie Thompson, Pierre Collet)
29-03 : Meeting for permanent members
29-03 : Invitation to CAGI6 meeting (Challenge Critical Assessment of Genome Interpretation VIth version) : results to be announced
31-03 : Meeting with Professor Seiamak BAHRAM, PUPH Immunologie biologique, and Vincent Noblet, to discuss a possible collaboration on a project in AI analysis of multi-omics data (Julie Thompson, Olivier Poch, Pierre Collet).
Février 2022
01-02 : Meeting for permanent members
08-02 : Group meeting (A-M)
15-02 : Journal Club
22-02 : Group meeting B (N-Z)
28-02 : Start of M1 internship by Tuba Uslu (Master Biologie Structurale Intégrative et Bionformatique) supervised by Julie Thompson
28-02 : Start of internship by Souliman El Moussaoui (ECAM formation Data Science) supervised by Julie Thompson, Kirlsey Chennen, Nicolas Scalzitti, collaboration Jean Muller, Laboratoire de diagnostic génétique, CHU de Strasbourg
28-02 : Start of M1 internship by Timothé Benoît (Master Biologie Structurale Intégrative et Bionformatique) supervised by Claudine Mayer
28-02 : Start of M1 internship by Anthony Seyller (Master Biologie Structurale Intégrative et Bionformatique) supervised by Claudine Mayer and Kirsley Chennen
28-02 : Start of M2 internship by Khayala Gaybaliyeva, M2 Sciences de Données et Intelligence Artificielle, Université Franco-Azerbaidjanaise, supervised by Nathalie Al Makdessi
28-02 : Start of M2 internship by Mahir Israyilov, M2 Sciences de Données et Intelligence Artificielle, Université Franco-Azerbaidjanaise, supervised by Ali Ayadi, Anne Jeannin-Girardon and Pierre Collet
25-02 : Acceptation of project RARETIA ANR-20-MRB-00XX-03 (ANR/Investissements d'Avenir: Accelerating Research and Innovation on Rare Diseases through Databases)
18-02 : Work meetings with SDC, CSIP, FEMTO-ST, Mob-ion and AAQIUS in the context of project AI-ReFuel ANR 2022 (preparation of a detailed proposal for the transition to phase 2), Ali Ayadi project coordinator.
21-02 : Meeting to prepare project Correau, ANR phase 2 (INRAE, Eurométropole, CNAM, ICube)
04-02 : End of project MedCTF - medical data management application for cybersecurity challenge, internship of Tayyip Gedik (supervised by Pierre Parrend)
16-02 : Submission of a pre-proposal "Development of new analytic tools and pathways to accelerate diagnosis and facilitate diagnostic monitoring of rare diseases" to AP European Joint Programme Rare Diseases, in collaboration with Amélie Piton, IGBMC.
16-02 : Submission of a pre-proposal "RAinMARK : New tools and predictive markers for better patient care and treatment solutions in MCOPS12" to AP European Joint Programme Rare Diseases, in collaboration with Wojciech KREZEL, IGBMC.
09-02 : Submission of a response to Appel à manifestation d’intérêt - Chaire de professeur junior "GROOT: atlas of Gene RepertOire evOluTion", Odile Lecompte
02/03-02 : Organisation of meetings Coalition Café (en ligne) by S. Cambie, R. J. Kang, J.-S. Sereni & Y. Yuditski.
07/11-02 : Visit of J. Volec (Czech Technical University, République tchèque).
10-02 : Presentation by J. Volec at the Stochastic Computing Seminar (IRMA) : Graph limits, common graphs and Sidorenko's conjecture.
23-02 : Meeting with Laurence Choulier (faculté de pharmacie) to discuss potential co-supervision of thesis (Quentin Rott), Julie Thompson, Odile Lecompte
24-02 : Meeting with Prof. Bourcier and Emilia Koestel, Ophtalmologue, CHU de Strasbourg to discuss potential collaboration as a follow-up of project Myo-XIA, with Corentin Meyer, Julie Thompson, Olivier Poch, Pierre Collet
Janvier 2022
03-01 : Start of M2 internship by Dorine Merlat (Master Biologie Structurale Intégrative et Bionformatique) supervised by O. Lecompte
03-01 : Start of M2 internship by Nicolas Haas (Master Biologie Structurale Intégrative et Bionformatique) supervised by O. Poch and K. Chennen
03-01 : Start of M2 internship by Arthur Vogt (Master Biologie Structurale Intégrative et Bionformatique) supervised by C. Mayer
03/07-01 : Participation (online) of J.-S. Sereni at the colloque Graph Theory à Oberwolfach (Allemagne)
11-1: Start of PhD by Julien Michel on the project Damiage, supervised by Pierre Parrend (programme RAPID, led by EPITA)
11-01 : Group meeting A (A-M)
11-01 : Annual meeting of French Bioinformatics Institute, to discuss roadmap for 2022-2027
17-01 : Participation of O. Lecompte in the meeting organised by european consortium ERGA (European Reference Genome ATlas)
18-01 : (*) Journal Club
18/19-01 : Meeting Institut de Myologie Paris; Project: AI and multi-level knowledge base for the diagnosis of congenital myopathies (Corentin Meyer/Olivier Poch/Kirsley Chennen)
20-01 : Meeting to prepare project for European Joint Programme RARE DISEASES (Olivier Poch/Kirsley Chennen)
21-01 : Meeting with CInflows e-solutions for medical workflows, on the use of AI to determine the size of heart valves and on the anonymization of medical files
24-01 : Meeting with Urania Therapeutics, on the creation of a knowledge base dedicated to therapies for genetic diseases with false-sense technology of 'Read-Through' molecules within ribosomes (Olivier Poch/Kirsley Chennen/Nicolas Haas)
25-2: Work session 'Anomaly detection in networks' with PhD and post-doc students of 'Réseau' team (Cristel Pelsser) and CSTB (Pierre Parrend)
25-01 : Group meeting B (N-Z)
27-01 : Presentations by students Lalla Aicha Koné and Yohan Solon
31-01 : Meeting to prepare project RDG AMI Atelier de la donnée (Julie Thompson)